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Krzysztof Kopera

2001-Jul-06 16:32 UTC

[R] How to build R-1.3.0 under HP-UX 11.00

Hello,

I am new in R and I am delighted with it, so I am trying to bulid R-1.3.0
from sources under HP-UX 11.00 using f2c and X11 support. Configuration
phase is OK but using make I have errors:

        gcc -Wl,-E  -o R.bin  CConverters.o  Rdynload.o RNG.o  apply.o
arithmetic.o array.o attrib.o  bind.o builtin.o  charac
ter.o coerce.o colors.o complex.o connections.o context.o  cov.o cum.o
dcf.o datetime.o debug.o devPS.o devPicTeX.o deparse.o
 deriv.o  devices.o dotcode.o dstruct.o duplicate.o  envir.o errors.o
eval.o  format.o fourier.o  gram.o gram-ex.o graphics.o
 internet.o iosupport.o  lapack.o list.o logic.o  main.o match.o memory.o
model.o  names.o  objects.o optim.o optimize.o optio
ns.o  par.o paste.o platform.o  plot.o plot3d.o plotmath.o  print.o
printarray.o printvector.o printutils.o  random.o regex.o
relop.o  saveload.o scan.o seq.o size.o sort.o source.o split.o
subassign.o subscript.o subset.o summary.o  unique.o util.o
version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a
../nmath/libnmath.a   -L/opt/f2c/lib/ -lm -ldld -L/usr/local/li
b  -ltermcap -lm
/usr/bin/ld: Unsatisfied symbols:
   xdr_double (code)
   xdr_string (code)
   xdrstdio_create (code)
   xdr_bytes (code)
   xdr_int (code)
   i_len (code)
   d_sign (code)
collect2: ld returned 1 exit status
*** Error exit code 1

Do you know what to do? I have set FLIBS = -L/opt/f2c/lib -ln; previously
FLIBS = /opt/f2c/lib -ln and it is not good.

Best regards
  Kris

PS. Sorry my english.



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Prof Brian Ripley

2001-Jul-06 16:52 UTC

head link

[R] How to build R-1.3.0 under HP-UX 11.00

The first few errors mean that you don't have xdr support in the libraries
you included. R checks for the headers rpc/rpc.h and rpc/xdr.h so you have
those.

Try man xdr and see if it requires an additional library.


The last two are problems with missing -lf2c.  Configuring with --with-f2c
should include that for you.

I think we need to know exactly what you did.  Perhaps you needed
FLIBS="-L/opt/f2c/lib -lf2c -lm"?


On Fri, 6 Jul 2001, Krzysztof Kopera wrote:
> Hello,
>
> I am new in R and I am delighted with it, so I am trying to bulid R-1.3.0
> from sources under HP-UX 11.00 using f2c and X11 support. Configuration
> phase is OK but using make I have errors:
>
>         gcc -Wl,-E  -o R.bin  CConverters.o  Rdynload.o RNG.o  apply.o
> arithmetic.o array.o attrib.o  bind.o builtin.o  charac
> ter.o coerce.o colors.o complex.o connections.o context.o  cov.o cum.o
> dcf.o datetime.o debug.o devPS.o devPicTeX.o deparse.o
>  deriv.o  devices.o dotcode.o dstruct.o duplicate.o  envir.o errors.o
> eval.o  format.o fourier.o  gram.o gram-ex.o graphics.o
>  internet.o iosupport.o  lapack.o list.o logic.o  main.o match.o memory.o
> model.o  names.o  objects.o optim.o optimize.o optio
> ns.o  par.o paste.o platform.o  plot.o plot3d.o plotmath.o  print.o
> printarray.o printvector.o printutils.o  random.o regex.o
> relop.o  saveload.o scan.o seq.o size.o sort.o source.o split.o
> subassign.o subscript.o subset.o summary.o  unique.o util.o
> version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a
> ../nmath/libnmath.a   -L/opt/f2c/lib/ -lm -ldld -L/usr/local/li
> b  -ltermcap -lm
> /usr/bin/ld: Unsatisfied symbols:
>    xdr_double (code)
>    xdr_string (code)
>    xdrstdio_create (code)
>    xdr_bytes (code)
>    xdr_int (code)
>    i_len (code)
>    d_sign (code)
> collect2: ld returned 1 exit status
> *** Error exit code 1
>
> Do you know what to do? I have set FLIBS = -L/opt/f2c/lib -ln; previously
> FLIBS = /opt/f2c/lib -ln and it is not good.
>
> Best regards
>   Kris
>
> PS. Sorry my english.
>
>
>
>
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
> r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
> Send "info", "help", or "[un]subscribe"
> (in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
>
_._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._
>
-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272860 (secr)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at
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_._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._

Kurt Hornik

2001-Jul-08 06:54 UTC

head link

[Rd] Re: [R] How to build R-1.3.0 under HP-UX 11.00

>>>>> Prof Brian Ripley writes:
> The first few errors mean that you don't have xdr support in the
> libraries you included. R checks for the headers rpc/rpc.h and
> rpc/xdr.h so you have those.
> Try man xdr and see if it requires an additional library.
Actually, I think configure is not smart enough about this.

We currently test for the headers but not for any xdr_* library
function.  As we say that only ISO C can be assumed and everything else
must be tested for, I think we must test for the library functions too.
But where?

-k
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To:
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Krzysztof Kopera

2001-Jul-09 14:08 UTC

head link

[R] How to build R-1.3.0 under HP-UX 11.00

Sorry, but my mail program add "ODP" instead "Re" to subject
of my previous
letter.
My last problem is solved but I have new, serious problem with making
internet module (under src/modules/internet), below is output after
"make":

        gcc -shared -fPIC  -o internet.sl  Rsock.o internet.o nanoftp.o
nanohttp.o sock.o sockconn.o
/usr/bin/ld: DP relative code in file Rsock.o - shared library must be
position
    independent.  Use +z or +Z to recompile.
collect2: ld returned 1 exit status

Can you help me? Maybe anyone have experience in building R under HP-UX
11.00 or other HP-UX.

Kris




                    Prof Brian
                    Ripley               Do:     Krzysztof Kopera
<Krzysztof_Kopera/HeadQ at netia.pl>
                    <ripley at stats        DW:     <r-help at
hypatia.math.ethz.ch>
                    .ox.ac.uk>           Temat:  Re: [R] How to build R-1.3.0
under HP-UX  11.00

                    2001-07-06
                    18:52






The first few errors mean that you don't have xdr support in the libraries
you included. R checks for the headers rpc/rpc.h and rpc/xdr.h so you have
those.

Try man xdr and see if it requires an additional library.


The last two are problems with missing -lf2c.  Configuring with --with-f2c
should include that for you.

I think we need to know exactly what you did.  Perhaps you needed
FLIBS="-L/opt/f2c/lib -lf2c -lm"?


On Fri, 6 Jul 2001, Krzysztof Kopera wrote:
> Hello,
>
> I am new in R and I am delighted with it, so I am trying to bulid R-1.3.0
> from sources under HP-UX 11.00 using f2c and X11 support. Configuration
> phase is OK but using make I have errors:
>
>         gcc -Wl,-E  -o R.bin  CConverters.o  Rdynload.o RNG.o  apply.o
> arithmetic.o array.o attrib.o  bind.o builtin.o  charac
> ter.o coerce.o colors.o complex.o connections.o context.o  cov.o cum.o
> dcf.o datetime.o debug.o devPS.o devPicTeX.o deparse.o
>  deriv.o  devices.o dotcode.o dstruct.o duplicate.o  envir.o errors.o
> eval.o  format.o fourier.o  gram.o gram-ex.o graphics.o
>  internet.o iosupport.o  lapack.o list.o logic.o  main.o match.o memory.o
> model.o  names.o  objects.o optim.o optimize.o optio
> ns.o  par.o paste.o platform.o  plot.o plot3d.o plotmath.o  print.o
> printarray.o printvector.o printutils.o  random.o regex.o
> relop.o  saveload.o scan.o seq.o size.o sort.o source.o split.o
> subassign.o subscript.o subset.o summary.o  unique.o util.o
> version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a
> ../nmath/libnmath.a   -L/opt/f2c/lib/ -lm -ldld -L/usr/local/li
> b  -ltermcap -lm
> /usr/bin/ld: Unsatisfied symbols:
>    xdr_double (code)
>    xdr_string (code)
>    xdrstdio_create (code)
>    xdr_bytes (code)
>    xdr_int (code)
>    i_len (code)
>    d_sign (code)
> collect2: ld returned 1 exit status
> *** Error exit code 1
>
> Do you know what to do? I have set FLIBS = -L/opt/f2c/lib -ln; previously
> FLIBS = /opt/f2c/lib -ln and it is not good.
>
> Best regards
>   Kris
>
> PS. Sorry my english.
>
>
>
> -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.
-.-.-.-> r-help mailing list -- Read
http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html> Send "info", "help", or "[un]subscribe"
> (in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
> _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._.
_._._._>
--
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272860 (secr)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595




-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
_._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._

Kurt Hornik

2001-Jul-09 20:23 UTC

head link

[Rd] Re: Re: [R] How to build R-1.3.0 under HP-UX 11.00

>>>>> Krzysztof Kopera writes:
> Sorry, but my mail program add "ODP" instead "Re" to
subject of my
> previous letter.  My last problem is solved but I have new, serious
> problem with making internet module (under src/modules/internet),
> below is output after "make":
>         gcc -shared -fPIC  -o internet.sl  Rsock.o internet.o nanoftp.o
> nanohttp.o sock.o sockconn.o
> /usr/bin/ld: DP relative code in file Rsock.o - shared library must be
> position
>     independent.  Use +z or +Z to recompile.
> collect2: ld returned 1 exit status
> Can you help me? Maybe anyone have experience in building R under
> HP-UX 11.00 or other HP-UX.
Maybe I am getting paranoid or it is too late at night but something
looks awfully wrong ... all modules should compile using PIC.  

This should really be done using .lo in the OBJECTS.  However, for
reasons I cannot remember the GUI modules which have been around for
some time use .o instead.  They get PIC, though, by

  ALL_CFLAGS = $(R_XTRA_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)

The modules added in 1.3.0 do not do this, which I think is wrong.

I'll be gone for a workshop for the next two days, and will look into
this on Thu.

-k
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r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To:
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